{"id":10209,"date":"2020-06-29T09:36:52","date_gmt":"2020-06-29T09:36:52","guid":{"rendered":"https:\/\/bgrssb.icgbio.ru\/2020\/2020\/06\/29\/automatic-annotation-of-operons-responsible-for-o-antigen-synthesis\/"},"modified":"2020-06-29T09:36:52","modified_gmt":"2020-06-29T09:36:52","slug":"automatic-annotation-of-operons-responsible-for-o-antigen-synthesis","status":"publish","type":"post","link":"https:\/\/bgrssb.icgbio.ru\/2020\/2020\/06\/29\/automatic-annotation-of-operons-responsible-for-o-antigen-synthesis\/","title":{"rendered":"Automatic Annotation of Operons Responsible for O-antigen Synthesis"},"content":{"rendered":"<p>Danil Zilov<sup>1<\/sup>, Polina Chesnokova<sup>2<\/sup>, Alexey Komissarov<sup>3<\/sup><br \/><sup>1<\/sup>Laboratory of Applied Genomics, SCAMT, ITMO University, St. Petersburg, Russia, zilov@scamt-itmo.ru<br \/><sup>2<\/sup>Laboratory of Applied Genomics, SCAMT, ITMO University, St. Petersburg, Russia, chesnokova@scamt-itmo.ru<br \/><sup>3<\/sup>Laboratory of Applied Genomics, SCAMT, ITMO University, St. Petersburg, Russia, komissarov@scamt-itmo.ru<\/p>\n<p><strong>Unfortunately, the most ready-made tools for serotype determination are limited to genome <em>E. Coli<\/em> only. However, there is a problem due to the low accuracy of \u0420\u045b-antigen cluster identification in the genome. Pipeline, which was created due the work, solves this problem and can be used to find and annotate a cluster of genes in genome of the most gram-negative bacteria.<\/strong><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Danil Zilov1, Polina Chesnokova2, Alexey Komissarov31Laboratory of Applied Genomics, SCAMT, ITMO University, St. Petersburg, Russia, zilov@scamt-itmo.ru2Laboratory of Applied Genomics, SCAMT, ITMO University, St. Petersburg, Russia, chesnokova@scamt-itmo.ru3Laboratory of Applied Genomics, SCAMT, ITMO University, St. Petersburg, Russia, komissarov@scamt-itmo.ru Unfortunately, the most ready-made tools for serotype determination are limited to genome E. Coli only. However, there is a problem due to the low accuracy of \u0420\u045b-antigen cluster identification in the genome. Pipeline, which was created due the work, solves this problem and can be used to find and annotate a cluster of genes in genome of the most gram-negative bacteria.<\/p>\n","protected":false},"author":9,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[2171],"tags":[1896,1400,1895,1680],"_links":{"self":[{"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/posts\/10209"}],"collection":[{"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/users\/9"}],"replies":[{"embeddable":true,"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/comments?post=10209"}],"version-history":[{"count":0,"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/posts\/10209\/revisions"}],"wp:attachment":[{"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/media?parent=10209"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/categories?post=10209"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/bgrssb.icgbio.ru\/2020\/wp-json\/wp\/v2\/tags?post=10209"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}