International Multiconference “Bioinformatics of Genome Regulation and Structure\Systems Biology”

Tag

bacteria

2 RESULTS
Genomics, transcriptomics, bioinformatics symposiumPredicting elongation efficiency of gene translation for annotation of bacterial genomes: a case study for biosynthetic gene clusters of nonribosomal peptides

Predicting elongation efficiency of gene translation for annotation of bacterial genomes: a case study for biosynthetic gene clusters of nonribosomal peptides

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Poster (download)

[pdf-embedder url=”https://bgrssb.icgbio.ru/wp-content/uploads/2020/07/414.pdf”]
A.I. Klimenko1, Yu.G. Matushkin2, D.A. Afonnikov3
1Kurchatov Genomics Center, Institute of Cytology and Genetics, klimenko@bionet.nsc.ru
2ICG SB RAS, mat@bionet.nsc.ru
3ICG SB RAS, NSU, ada@bonet.nsc.ru

The gene expression levels for bacteria are largely determined by the efficiency of translation elongation. We have performed bioinformatic elongation efficiency analysis of NRP biosynthetic gene clusters (BGCs) obtained from ANTISMASH-DB using whole-genome sequences of bacterial genomes that are available at NCBI Genbank. The analysis has provided the information about distribution of nonribosomal peptide biosynthetic gene clusters in bacteria and their putative translation elongation efficiency.

Genomics, transcriptomics, bioinformatics symposiumHemolymph metagenome of endemic amphipod Eulimnogammarus verrucosus from Lake Baikal

Hemolymph metagenome of endemic amphipod Eulimnogammarus verrucosus from Lake Baikal

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Poster (download)

[pdf-embedder url=”https://bgrssb.icgbio.ru/wp-content/uploads/2020/07/456.pdf”]
Ekaterina Shchapova1
1Irkutsk State University, shchapova.katerina@gmail.com

A diverse number of studies indicates that the hemolymph of aquatic invertebrates, apparently healthy invertebrates, is non-sterile. In this study we for the first time characterized the bacterial diversity in hemolymph of endemic amphipods from Lake Baikal on the example of abundant littoral species Eulimnogammarus verrucosus.