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Systems computational biology: analysis, mathematical modeling and information technologies symposiumNamed entity recognition in medical texts in Russian using deep learning models

Named entity recognition in medical texts in Russian using deep learning models

Igor Viktorovich Moskalev1, Luybov\’ Anatol\’evna Khvorova2
1ASU, Barnaul, Russia, moskalev.igor.v@gmail.com
2ASU, Barnaul, Russia, khvorovala@gmail.com

The application of contextual and domain-specific pre-trained word embeddings for recognition of medical concepts in free-text clinical notes in Russian is considered. As it is known, a large amount of medical data is stored in electronic form, a significant part – in an unstructured form (medical history, extracts, description of the results of various tests). This data contains a large amount of useful information for the diagnosis of diseases. The results of the experiments showed the effectiveness of applying contextual language models which pre-trained on medical texts in the task biomedical named entity recognition.