Accepted_test

Development of a computational pipeline for searching for families of multidomain proteins in plant genomes

by Bocharnikova M | Kurchatov Genomic Center of the Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia

Abstract ID: 183

Event: BGRS-abstracts

Sections: [Sym 6] Section “Genomics, genetics and systems biology of plants”

Modern sequencing technologies have led to a huge flow of data on plant genome sequences. These data require high-performance computer annotation to determine protein functions. The purpose of this work was to create the Orthodox computing pipeline, which is designed to search for orthologous proteins taking into account their domain composition.

We tested the accuracy of the system and implemented it for the analysis of plant proteins. The conveyor was used to identify orthologs in the genomes of cereals.

The computational pipeline we have developed can be successfully used to more efficiently search for families of multidomain proteins in plant genomes.

The study was supported by the Kurchatov Genomic Center of the ICG SB RAS (project No. 075-15-2019-1662).