Status of Methylation and Transcriptional Activity of Ecdysone Receptor EcR Gene in the Colorado Beetle Leptinotarsa decemlineata Say after application of S-adenosylmethionine

Yuri Nikonorov1, Tansulpan Akhmetkireeva2, Galina Benkovskaya31Institute of Biochemistry and Genetics Ufa Federal research centre of RAS Russia, griffinriders@mail.ru2Institute of Biochemistry and Genetics Ufa Federal research centre of RAS Russia, tansulpan.ufa@gmail.com3Institute of Biochemistry and Genetics Ufa Federal research centre of RAS Russia, bengal2@yandex.ru Motivation and Aim: Gene of ecdysone receptor coding the protein EcR belongs to superfamily of nuclear steroid receptors, which has an evident domain structure and is of great importance for insect development and reproducing [1]. In cells of different tissues protein EcR presents as a combination of its isoforms coded by some variants of mRNA generated consequently by alternative splicing and change in isoforms balance has phenotypical exhibition [2]. In the Colorado beetle Leptinotarsa decemlineata Say two variants of mRNA coding A and B1 isoforms with tissue-specific character of their number variations are described [3]. Our aim is the definition of DNA methylation character in separate loci of gene EcR coding region in the Colorado beetle, investigation of environmental effects and detection of correlation between DNA methylation and transcriptional activity of EcR gene.Methods and Algorithms: Adult Colorado beetles sampled in potato plantation were used as an object.  The source of methyl groups (Heptral –  S-adenosylmethionine, SAM, Abbott Laboratories GmbH, Germany) was applied as suspension (80 mg/10 ml of water) for treatment of fresh potato leaves intended for beetles feeding. DNA and RNA were extracted from tissues of thorax and gonads of adults by phenol-detergent method. The presence of 5-methylcytosine in Colorado beetles DNA was determined by MSRE-PCR (methyl-sensitive PCR). Transcriptional activity of genes of ecdysone receptor EcR, DNA-methylase Dnmt1 and protein transporter of juvenile hormone Juv was evaluated by qRT-PCR with reference gene RP18.Results: The presence of methylated cytosine in DNA coding the regions of EcR gene in the L. decemlineata Say is of a specific character:  DNA site for HpaII restrictase in exon distinctive for B1 isoform degraded completely under hydrolysis in all cases, i.e. it is constantly demethylated. Considerable part of DNA in exons specific for A isoform and constant for both isoforms is methylated permanently in a varying degree. In two months the addition of methyl group source (SAM) to food caused decrease of methylation level in coding region of EcR gene in adults of both sexes.  Content of mRNA of EcR gene in cells of thorax increased 6,1–fold  in males and 2,2-fold in females; in gonads it increased 7,7-fold and 9,1- fold respectively. The […]

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The Rich Inner World of Colorado Potato Beetles – a Metagenomic Survey of Viral Diversity in Public Data

Maria Starchevskaya1, Yuri Vyatkin2, Denis Antonets3 1SRC VB Vector Rospotrebnadzor, Koltsovo, Russia, starchevskayamaria@mail.ru 2Novosibirsk State University, Novosibirsk, Russia; Novel Software Systems LLC, Novosibirsk, Russia, vyatkin@gmail.com 3SRC VB Vector Rospotrebnadzor, Koltsovo, Russia; Novel Software Systems LLC, Novosibirsk, Russia, antonec@yandex.ru Abstract Recent metagenomic studies of various environments revealed an enormous number of viruses, with hundreds of previously unknown species and even new virus families, and thus greatly expanded our understanding of the virosphere. Investigations of insect virome will provide new insights into ecology and evolution of viruses and their hosts. Colorado potato beetle is one of the most serious insect pests feeding on Solanaceae plants. The Colorado potato beetle virome has not been studied yet and, as far as we know, our work is the first attempt to discover viral material in DNA- and RNA-Seq data of L. decemlineata. We also hope that identification of new viruses will help to extend the arsenal of biopesticides.

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