BacRegDB: a database of bacterial regulatory elements with structural evidence

by Pavel Vychyk | Duvalov E. | Digris A. | Skakun V. | Nikolaichik Y. | Department of Molecular Biology, Belarusian State University, Minsk, Belarus | Department of Systems Analysis and Computer Modelling, Belarusian State University, Minsk, Belarus Motivation and Aim: Most of the available bacterial genome annotations provide information about ORFs and their products. […]

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Genome assembly of Colletotrichum lini from long Nanopore reads

by Sigova E.A. | Dvorianinova E.M. | Rozhmina T.A. | Kudryavtseva L.P. | Melnikova N.V. | Dmitriev A.A. | Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia | Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia | Federal Research Center for Bast Fiber Crops, Torzhok, Russia Motivation and Aim: […]

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Sequencing Linum usitatissimum L. genomic DNA extracted from nuclei

by Dvorianinova E.M. | Bolsheva N.L. | Rozhmina T.A. | Sigova E.A. | Pushkova E.N. | Melnikova N.V. | Dmitriev A.A. | Engelhardt Institute of Molecular Biology, RAS, Moscow, Russia | Federal Research Center for Bast Fiber Crops, Torzhok , Russia The genetics of agricultural plants has shown the importance of assembling accurate and contiguous […]

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Potential bacteriophage recombination sites inside genes containing cysteine repeats

by Sorokina Nadezhda | Daugavet Maria | Applied Genomics Laboratory, SCAMT Institute, ITMO University, Saint Petersburg, Russia | Laboratory of Noncoding DNA, Institute of Cytology, Russian Academy of Sciences, Saint Petersburg, Russia Prokaryotic-specific domains are often found in eukaryotic organisms. This event is often associated with horizontal gene transfer and some studies have considered viruses […]

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Transcription factor binding sites: data integration, stable identifiers and incremental builds

by Kolmykov Semyon | Kondrakhin Yury | Sharipov Ruslan | Yevshin Ivan | Ryabova Anna | Kolpakov Fedor | Sirius University of Science and Technology, Sochi, 354340, Russian Federation | Federal Research Center for Information and Computational Technologies, Novosibirsk, 630090, Russian Federation | Novosibirsk State University, 630090, Russian Federation | BIOSOFT.RU, LLC, Novosibirsk, 630090, Russian […]

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Chromatin loops are involved in spatial organization of replication in budding yeast

by Kirill Ulianov | Irina Zhegalova | Ekaterina Khrameeva | Mikhail Gelfand | Skolkovo Institute of Science and Technology, Moscow, Russia | Skolkovo Institute of Science and Technology, Moscow, Russia; Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia; Faculty of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia | Skolkovo […]

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